SSAM
release
Contents
Spatial gene expression analysis with SSAM
Module contents
SSAM
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B
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C
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E
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F
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G
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M
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N
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P
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R
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S
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V
B
bin_celltypemaps() (ssam.SSAMAnalysis method)
C
calc_cell_type_compositions() (ssam.SSAMAnalysis method)
calc_correlation_map() (ssam.SSAMAnalysis method)
calc_spatial_relationship() (ssam.SSAMAnalysis method)
cluster_vectors() (ssam.SSAMAnalysis method)
E
exclude_and_merge_clusters() (ssam.SSAMAnalysis method)
exclude_and_merge_domains() (ssam.SSAMAnalysis method)
expand_localmax() (ssam.SSAMAnalysis method)
F
filter_celltypemaps() (ssam.SSAMAnalysis method)
find_domains() (ssam.SSAMAnalysis method)
find_localmax() (ssam.SSAMAnalysis method)
G
get_celltype_correlation() (ssam.SSAMDataset method)
M
map_celltypes() (ssam.SSAMAnalysis method)
N
normalize_vectors() (ssam.SSAMAnalysis method)
normalize_vectors_sctransform() (ssam.SSAMAnalysis method)
P
plot_celltype_composition() (ssam.SSAMDataset method)
plot_celltypes_map() (ssam.SSAMDataset method)
plot_correlation_map() (ssam.SSAMDataset method)
plot_diagnostic_plot() (ssam.SSAMDataset method)
plot_domains() (ssam.SSAMDataset method)
plot_expanded_mask() (ssam.SSAMDataset method)
plot_l1norm() (ssam.SSAMDataset method)
plot_localmax() (ssam.SSAMDataset method)
plot_spatial_relationships() (ssam.SSAMDataset method)
plot_tsne() (ssam.SSAMDataset method)
plot_umap() (ssam.SSAMDataset method)
R
rescue_cluster() (ssam.SSAMAnalysis method)
run_fast_kde() (ssam.SSAMAnalysis method)
run_kde() (ssam.SSAMAnalysis method)
run_sctransform() (in module ssam)
S
ssam (module)
SSAMAnalysis (class in ssam)
SSAMDataset (class in ssam)
V
vf (ssam.SSAMDataset attribute)
vf_norm (ssam.SSAMDataset attribute)
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v: release
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